Saturday, December 17, 2016
Wrapping up the semester
- Prof. Woo EJ from Kyung Hee University gave a very interesting talk on Electrical Impedance Tomography on the last Department Colloquium of the year, on 12/8.
- Through the proposal and encouragement of Prof. Woo, Dr. Lee JS and I agreed to host a mini-symposium in an annual IEEE EMB conference in Jeju Island in July next year.
- A year-end party was held on Saturday 12/16 for the CNIR members and families. PhD candidate Mr. Park Jinil was given the best student publication award of the year.
- Dr. Lee Hwan ("Sean") from Max Planck Institute in Frankfurt joined the CNIR for the winter to conduct research on non-human primates.
- A new faculty is set to join the BME department and CNIR from Univ. Colorado from March 2017. He will do research on human fMRI from cognition standpoint.
Now off to the new year - the winter recess will be a valuable time to reflect on the past year's experiences and shape ideas to steer and define the MR research direction in the coming years.
Wednesday, November 30, 2016
End of November
- There was the 6th Joint Symposium between SKKU and Nagoya University of Japan, at our building. I delivered a 25 min talk on MR-based tissue susceptibility measurement.
- Yesterday, the undergraduate students and the teaching faculty members of the BME department had a social get-together, with recreational bowling games in a local place and informal lunch in small groups.
- Seulki Yoo was officially accepted as an incoming graduate student in the BME department. She also got a school scholarship. Congratulations to Seulki!
- Undergraduate research on MR susceptometry on phantoms is making slow progress. JY Heo is in the process of preparing a gelatin phantom for B0 mapping.
Friday, November 11, 2016
ISMRM 2017
A few first impressions that I got out of the submission process this year:
- I cannot say I prefer the HTML format. For submission it is a pain to edit equations twice, once for drafting in a word processor, and then again during submission.
- Adding authors and authors' affiliations was a confusing process. It was good to allow copying affiliations from other authors but the click buttons didn't make it clear where in the process I was.
- 30 minutes before the closure, my abstract (2nd) number was 6969. I imagine the total submission count being well over 7000.
Thursday, October 20, 2016
Visit from Julich
Friday, October 14, 2016
Farewell to Mr. Anup Bidesi and the week of Oct. 10-14
Tuesday, October 4, 2016
Reflections from the QSM workshop
1. There was a break-out session to discuss current issues in QSM. The four topics were: Use of a reference tissue in QSM, Unmet/unsolved needs in QSM, Best pulse sequence in QSM, and SWI vs QSM for clinical impact. No clear conclusions were drawn, of course, which provided a valuable insider's look on what is still to be done.
2. The conference booklet was marked with "Confidential", with note that the abstracts could be for publication elsewhere, in an obvious effort to protect authors' choice to publish in a more official way.
3. South Korean participation was counted as 8, which was noted by the organizers as being high. Presentations from the three Korean speakers on the 3rd day, from me, Prof. Dong-hyun Kim, and Prof. Jongho-Lee, were all strong. After all, Prof. Jongho Lee spearheaded the decision to hold a 2019 QSM workshop in Korea.
For the scientific contents, the following were noteworthy.
1. No follow-up work presentation was made on some of the novel MREPT methods, including CSI(contrast source inversion)-EPT and cr(convection-reaction)-EPT.
2. Dr. Bilgic presented fast QSM acquisition which appeared very powerful.
3. SQUID susceptometer was used to characterize magnetic properties of tissue iron including ferritin at low temperature. Prof. Heinz Krenn from Graz presented on SQUID and low-field MRI. Of course I introduced myself and chatted with him.
4. Nothing on Habenula either.
5. Karin Shmueli from UCL, UK showed that localized QSM results are not very sensitive to whether the whole-brain is covered.
I would say that the Workshop was a success overall, although there was not really a major breakthrough.
Friday, September 30, 2016
IBS Conference
- Dr. Ogawa is interested in looking at fMRI studies on the effect of education, including musical training.
- Dr. Cho showed his radius-adjustable and wobbling PET detector system.
- Dr. Gore discussed neuronal tracking using Mn particles (Mn oxide moves along the axon and across a synapse); Prof. Kim Hyung later explained to me that its physical mechanism is unknown.
- Dr. Turner mentioned that current psychology studies are skewed by the dominant white population in the industrialized countries. Dr. Turner also showed a couple of slides on high-field (7T I believe) QSM in human brain.
The most intriguing to me was the discussion of Dr. Gore about white matter tractography based on functional correlation between neighboring voxels. This appeared very elegant, and I wonder why I never heard about this before.
Sunday, September 4, 2016
Fall Semester began!
- An opening ceremony for the BICS institute in the N Center, with a nice buffet dinner in the gallery area, open to the BME students,
- A research introduction seminar with the Founding director of BICS, Prof. Kataoka, followed by a nice dinner at an upscale restaurant,
- And of course all the hustles and bustles of the start of a semester with undecided students and panicking professors over course registrations.
Also, we have hired a Lab technician to operate the Machine shop on the 1st floor. Welcome to Mr. Cheon, Jin Whan!
Tuesday, August 23, 2016
Week of August 15-19
Good progress, and we sent off Seul-ki, the summer intern student, to where she currently goes to school with a good lunch on Friday.
Sunday, July 31, 2016
Summer in SKKU
Friday, July 22, 2016
Summer research
It so happened that my lab was the only one (out of 7) with two separate research projects for the two students. Four weeks is not a long time for a research with any level of completeness. I like the summer program name "Summer Immersion" of Cornell - it is an intensive activity with much focus required, from decision making to execution. The two research topics, one on in-vivo brain R2* and the other on phantom susceptibility, were well digested by the students and the time spent was well worth it.
Friday, July 8, 2016
Summer School - Workshop on MRI at CNIR
Friday, June 24, 2016
GE head-only scanner in the news
In an unrelated GE web resource, MR diffusion tractography is featured as a tool for a European (but not EU, as per today's Brexit decision!) autism research. It is mentioned that machine learning from Steve Williams' team is utilized for the research. I am not sure if there is anything new on the MR side of this latest development in GE-King's College collaboration.
Sunday, June 19, 2016
Finding referees
My other problem with searching for referees is a practical one. The research community should change the way the authors are identified by their names. For Korean researchers, in particular, I have long thought that the first and the last names should be swapped in academic publications. It is simply ridiculous to ask Korean scholars to conform to the Western naming convention, which is to fully spell out the last name only, while abbreviating the first name by it initial(s). That is unfit as a global way to identify the authors. Any naming degeneracy-- now I see it first-hand-- leads to confusion in the referee selection process, and its natural consequence, sadly, is for the editorial board simply to avoid Korean researchers from the referee pool. As a numeric author ID is not likely to be liked by many, in the long run the journals should allow the authors to designate which name, first or last, should be used as a primary identifier on record.
Friday, June 10, 2016
First meeting to gear up for the next year's Korean MRI Conference
1. Imperatives: The society wants to grow more international. The ICMRI conference should attract more international registrants. In practice, this can be most readily achieved by fostering more resource exchange with Chinese and other Asian magnetic resonance communities.
2. Desirables: Expansion of mutual educational sessions between the PhD's and MD's. The former, including the PhD students, will benefit from more coherent medical case and practice reports, while the latter will appreciate better plain-language expositions of MR theories covered at the conference.
Kudos to the hands and brains of the KSMRM society!
Thursday, June 2, 2016
Susceptibility seminar
The comparison between conventional physical susceptometry and MR-based measurement interested the audience. It certainly intrigues me that MRI phase measurement can be so sensitive to small magnetic changes in the object. Having started my research career in sensitive magnetometry, I now feel like coming a full circle to undertake research on applying MRI to magnetometry.
Wednesday, May 25, 2016
Summer Internship Announced
Wednesday, May 11, 2016
Wednesday update, Singapore
1. My poster was attended by a couple of very interested researchers both from Western Ontario. They work on making an insert gradient coil and showed much interest in my PNS measurement with rotated head. They both said good words about Tom's ePoster on head-only scanner from yesterday, which I had missed. Later I went to the computer screen to look it up - the head-only ePoster was well presented.
2. I told a Siemens technical representative about the need to relax dB/dt limit on Prisma. We also discussed UTE options.
3. Lunch with Prof. Jaeseok Park.
4. Dinner with Prof. Seong-gi Kim's team.
5. Requested quote from Electric Geodesics on MR-compatible 32 ch sensor package.
6. Early morning educational session on QSM was helpful -- I asked the 1st speaker for his ppt slides by email.
Monday, May 9, 2016
Monday May 9th, 2016, Singapore
1. Dr. Seong-gi Kim's paper was displayed as the 5th most cited MRM paper published in 2013!
2. Dr. Erwin Hahn appeared on screen via Skype, to address the plenary hall audience! I was almost in tears to see him on the screen, positively to learn that he is still thinking clearly, but also by his visible sign of aging compared to when I last talked to him in Berkeley.
3. I delivered the 9+3 min oral presentation in a Session on Artifacts. I probably spoke too fast. A question was asked about the difference between this work and a Green's function sampling method. Later, I chatted with the questioner - he had an electronic poster, later in the day, about an alternative representation of the dipolar field kernel and its impact on QSM.
4. GE lunch time symposium had Eric Stahr showing one slide on head-only scanner delivered to Mayo Clinic. Exciting!
5. The MRM and JMRI reviewer session in the evening was very informative. Interesting to hear the JMRI Editor-in-Chief say that Discussion is the least important part when reviewing a manuscript. For MRM, Matt said the journal honors at most one of the preferred reviewers as suggested by the authors.
Sunday, May 1, 2016
ISMRM 2016
1. Moderation
This is the second time I am co-moderating a session in ISMRM. Each time, connections at GE have helped me be found by the Annual meeting committee for such a opportunity. Last year it was in a traditional oral session, on MRI systems calibration including B0 and B1 mapping. This time is different - it is for a day-long educational session. Pretty much a whole business day will be dedicated to this activity. It will be interesting though. I expect more of a housekeeping role than intervening in heated technical debates.
The session is "Physics for Physicists", on Saturday.
2. Poster
This is on Wednesday, in a session on MRI safety. I have had some material prepared on PNS in an asymmetric head-only gradient coil last year. Unfortunately, since my departure from GRC this work was orphaned, and I seriously thought about cancelling this poster. At the last minute, however, I obtained from GRC old electronic files used to prepare the abstract, and was able to edit the content into a minimally acceptable poster. PNS research itself continues to have my attention. At the meeting I will try to see what new results are discussed from Brian Rutt's group on head gradient PNS.
3. Oral presentation
Last Friday I pretty much completed the content of the oral presentation on an improved method to compute the B0 inhomogeneity map from susceptibility distribution. The 3 undergrad students timed my practice talk, and I still need to complete one page with computation time data from the students. This talk will be on Monday morning, on "Artifacts: System Imperfections & Implants".
Sunday, April 10, 2016
Undergraduate research participants
MRI is an excellent way to introduce young students to the field of medical physics and engineering. What can be more motivating than seeing your own body and brain so readily, in a totally non-invasive way? This is so as long as the students can run and be scanned on a machine safely. So the first task to everyone is to be trained on the use of the 3T scanner we have (Thank you Ms. Choi on being such an effective and resourceful instructor!). Next, we will look at how the magnetic susceptibility of the human body affects MRI - while generating simulation data for my ISMRM oral presentation this year in Singapore.
Sunday, March 27, 2016
Impressions from ICMRI
1. Dual language meeting. I thought it made sense to have explicit Korean and English language sessions in the conference. This does emphasize however the need for Korean professionals to be proficient in two languages. Foreign language speakers may still see it as a barrier to participating, but given many medical doctors in the audience who use only Korean in their work, it was probably a right balance.
2. The lecture by Dr. Cho Janghee was eye-opening when he showed the early 2 T scanner with a home-made gradient coil at KAIST. How does this fit into the history of MRI told by GE? How can IBS/SKKU be another history maker in MRI in ten years?
3. SKKU made a good show in the meeting, thanks to the hard work of the graduate students and postdocs who got numerous scientific recognitions for their presentations. Dr. Seong-gi Kim delivered a very comprehensible Korean lecture on CEST. I feel that the school and the institute got much needed visibility reinforcement during the past few days.
4. Unfortunately, there was no good planform for job postings.
I found a small number of presentations that had QSM components in them. It will be useful to follow up on these works.
Sunday, March 20, 2016
World Brain Week
In retrospect, I feel that I have unintentionally ignored the adult listeners in the audience. I should have been more neutral to the age of the listeners, and have avoided sounding like a teacher talking to a minor. Profs Suh Minah and Choi Myungwhan did do an excellent job talking about their optical methods of animal brain imaging and studies. Many questions from the students were directed to Prof. Choi, on opto-genetics.
Sunday, March 13, 2016
Highlights of the week, March 7-11
The undergraduate sophomores started to look for and join research labs to start their work on undergraduate thesis. I was contacted by two of them, and they are likely to meet with me regularly to discuss plans and progress soon. I understand that even the freshmen are supposed to work on a limited scope research supervised by a faculty. As one research project topic for either the 1st or the 2nd year students, I am thinking of an MR magnetometry experiment on Korean currency bills, with an eye on looking for a magnetic printout solution for small volume shimming.
There was a BME faculty dinner meeting at an upscale restaurant in a nearby city overlooking a lake.
On Friday I met with a former classmate who is now on the faculty of Gacheon University. The stories I am exposed to these days through these meetings are all interesting. They are both new and old, as a matter of fact, in the sense that they tell a story in a part of the world, and a corner of the society that are directly opposite to where I was in in the past several years, while at the same time that corner of the world and society is familiar to me from my faraway past so I can quickly understand why things are as I hear they are.
Saturday, March 5, 2016
Semester begins!
A few first impressions:
1. Internet makes it easy to find pictures for the lecture slides, on any subject.
2. There is a clear discrepency between the international language requirement by the University and the preference of both the students and the lecturers in the classroom.
3. I do feel that it would be helpful to have a definite class textbook (or a reader printout) for the graduent class I am running. This will improve as course develops.
4. Being able to address the students, albeit demanding, is a privilege, and a big and unmeasurable one.
Monday, February 29, 2016
Impressions from the conference
1. MEG and EEG are still struggling with low confidence in source localization. MEG is still trying to position itself as a cost-justified modality with unique capabilities. EEG is not as easy to use as one might think when it comes to source localization, due to need to exactly know sensor positions and handling time for many sensors with good skin contact. For fMRI, I asked Dr. Kim Seong-gi (on return to Suwon) on making scan faster; his assessment is that blood response-dependent nature of fMRI is the real source of sluggishness and poor time resolution. The desired resolution, it appears to me, is about 100 ms. For example, what is called N170 [ms] is related to facial recognition. I still feel it feasible to make fMRI useful in detecting fast dynamic functional processes.
2. Daejeon is rural for most part, and the train station on a Friday night is very crowded, with roads conjested that lead to the station, and many weekend travelers heading to the Seoul area. Passengers in the train were courteous; they refrained from making loud noise using cell phones. The railroad staff did not check train tickets, I guess it may be done randomly.
3. I thank our Center's chauffeur for giving me a ride to KRISS, door to door, in the morning. I was able to read a QSM article by F. Schweser in the car. It was about Homogeneity-Enabled Incremental Dipolar Inversion, dubbed HEIDI. I should make my own inversion code, ultimately.